NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114974_10007545

Scaffold Ga0114974_10007545


Overview

Basic Information
Taxon OID3300009183 Open in IMG/M
Scaffold IDGa0114974_10007545 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7996
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (64.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002267Metagenome / Metatranscriptome576Y
F078714Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0114974_1000754511F078714N/AMKRELLSFTVKEPKHRAHRVLFQNNTPFKPKVVQAKKSMYIRKSKHPKFDNNSDL*
Ga0114974_100075452F002267AGGAGMSGIMQATIGSWNSLYTPPVLVYDLDAANYSAVPVNGSTVAGTGSYAVTVLNAGGSIGWSATNSGIFTKSNATGTDAIYGGPNYVTGQSYSVFMAYQLTATSSGRLINTQNESVKDWLMGAYNGNPNTFYPNIAVNLPSSGADTAWHFGWGTWNNTTSTGQLYIATNTQPTNYSYTATNAGGGGFNQLRLWSRSSGSEVQTANIGFIKVYNGVLDLATIQSQYATYKARFGY*

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